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fold change
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Possible ways to select differential expressed genes using DeSeq2 or edgeR
R
deseq2
edger
differential gene expression
fold change
updated 2.2 years ago by
ATpoint
★ 4.2k • written 6.0 years ago by
Beginner
▴ 60
1
vote
2
replies
2.3k
views
diffBind report Fold scale
diffBind
Fold Change
updated 3.2 years ago by
Joe Nicholas
• 0 • written 5.5 years ago by
joseluis.ruiz
• 0
2
votes
4
replies
1.3k
views
Majority upregulated genes in edgeR
edger
differential expression
genes
fold change
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
ilovesuperheroes1993
• 0
0
votes
0
replies
963
views
PROBLEM WITH MFUZZ
mfuzz
fold change
log2
STANDARDISATION
6.0 years ago
prakashpandey1111
• 0
1
vote
1
reply
1.4k
views
What is the exact formula for the calculation of Fold Change (FC), p-val and q-val in Ballgown stattest?
ballgown
stattest
fold change
updated 6.3 years ago by
James W. MacDonald
66k • written 6.3 years ago by
ag1805x
▴ 80
0
votes
1
reply
1.6k
views
Question on fold change calculation for microarray data
logfc
limma
fold change
updated 7.8 years ago by
Gordon Smyth
51k • written 7.8 years ago by
Claudia
▴ 10
2
votes
7
replies
2.5k
views
About differentially expressed genes that found by edgeR
edgeR
DE analysis
fold change
cpm
updated 7.9 years ago by
Ryan C. Thompson
★ 7.9k • written 7.9 years ago by
Sara
▴ 10
7 results • Page
1 of 1
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Answer: Most sensible approach to a `stage*condition` design in DESeq2
by
swbarnes2
★ 1.4k
Doing a stage_treatment grouping is not the same as doing stage * treatment. You can use stage * treatment to compare one subgroup to anot…
Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Votes
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
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